Download Algorithm Engineering: 5th International Workshop, WAE 2001 by Gonzalo Navarro, Mathieu Raffinot (auth.), Gerth Stølting PDF

By Gonzalo Navarro, Mathieu Raffinot (auth.), Gerth Stølting Brodal, Daniele Frigioni, Alberto Marchetti-Spaccamela (eds.)

This ebook constitutes the refereed lawsuits of the fifth Workshop on set of rules Engineering, WAE 2001, held in Aarhus, Denmark, in August 2001. The 15 revised complete papers awarded have been conscientiously reviewed and chosen from 25 submissions. one of the issues addressed are implementation, experimental checking out, and fine-tuning of discrete algorithms; novel use of discrete algorithms in different disciplines; empirical examine on algorithms and information buildings; and methodological concerns concerning the means of changing consumer specifications into effective algorithmic suggestions and implemenations.

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Masek and M. S. Paterson, A Fast algorithm for computing string edit distances. in J. Comput. Sy. , Vol. 20, (1980), pp. 18–31. 14 The Max-Shift Algorithm for Approximate String Matching 25 11. E. W. Myers , A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Progamming, in Journal of the ACM 46,3 (1999) pp. 395–415. 15, 22, 24 12. S. B. Needleman and C. D. Wunsch, A general method applicable to the search for similarities in the amino acid sequence of the two proteins, in J.

2, 1, 1 > or < 2, 2, 1 >, in which the non empty children are 2 and 4, respectively. While the call tree has about n3 nodes, most of them have the same type. To deal with this issue systematically, we introduce the concept of type DAG. Given a fractal algorithm A, an input type < m, n, p >, and the corresponding call tree T = (V, E), the call type DAG D = (U, F ) is a DAG, where the arcs with the same source are ordered, such that: 1) U contains exactly Fractal Matrix Multiplication: Portability of Cache Performance 31 one node for each type occurring in T , the node corresponding to < m, n, p > is called the root of D; 2) F contains, for each u ∈ U , the ordered set of arcs (u, w1 ), .

J. Bilmes, Krste Asanovic, C. Chin and J. Demmel: Optimizing matrix multiply using PHiPAC: a portable, high-performance, Ansi C coding methodology. International Conference on Supercomputing, July 1997. 27 11. S. Carr and K. Kennedy: Compiler blockability of numerical algorithms. 114-124. 27 12. S. Chatterjee, V. V. Jain, A. R. Lebeck and S. Mundhra: Nonlinear array layouts for hierarchical memory systems. Proc. of ACM international Conference on Supercomputing, Rhodes,Greece, June 1999. 27, 28 13.

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